# CaMAP

Calcium imaging mapping and analysis pipeline.

Extracts neural events from calcium traces, aligns them with animal behavior, and computes spatial tuning metrics including rate maps, spatial information, stability, and place-cell classification.

## Getting Started

```{toctree}
:maxdepth: 1

installation
quickstart
```

## User Guide

```{toctree}
:maxdepth: 1

CLI workflows <workflows>
Notebooks <notebooks>
Pipeline details <pipeline>
CLI Reference <cli>
```

## API Reference

```{toctree}
:maxdepth: 1

modules
```